Detailed information of SNP:
|
SNP ID:
sf0910352993(Gbrowse)
Chromosome: chr09 Position: 10352993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 74.70% | 25.30% |
| All Indica | 764 | 97.38% | 2.62% |
| All Japonica | 489 | 43.35% | 56.65% |
| Aus | 33 | 48.48% | 51.52% |
| Indica I | 364 | 99.18% | 0.82% |
| Indica II | 198 | 93.94% | 6.06% |
| Indica Intermediate | 202 | 97.52% | 2.48% |
| Temperate Japonica | 330 | 55.76% | 44.24% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910352993 | C->T | LOC_Os09g16930(LOC_Os09g16930.1) | Synonymous |