Detailed information of SNP:
|
SNP ID:
sf0910353468(Gbrowse)
Chromosome: chr09 Position: 10353468 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 82.74% | 17.26% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 476 | 61.13% | 38.87% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 324 | 70.37% | 29.63% |
| Tropical Japonica | 90 | 32.22% | 67.78% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910353468 | G->A | LOC_Os09g16930(LOC_Os09g16930.1) | Non-Synonymous SNP |