Detailed information of SNP:
|
SNP ID:
sf0910354344(Gbrowse)
Chromosome: chr09 Position: 10354344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 85.53% | 14.47% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 446 | 60.54% | 39.46% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 70.36% | 29.64% |
| Tropical Japonica | 79 | 31.65% | 68.35% |
| Japonica Intermediate | 60 | 48.33% | 51.67% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910354344 | G->A | LOC_Os09g16930(LOC_Os09g16930.1) | Non-Synonymous SNP |