Detailed information of SNP:
|
SNP ID:
sf0910356998(Gbrowse)
Chromosome: chr09 Position: 10356998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 95.43% | 4.57% |
| All Indica | 751 | 94.41% | 5.59% |
| All Japonica | 488 | 97.54% | 2.46% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 346 | 93.64% | 6.36% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 200 | 96.00% | 4.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 87.91% | 12.09% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910356998 | T->C | LOC_Os09g16940(LOC_Os09g16940.1) | Non-Synonymous SNP |