Detailed information of SNP:
|
SNP ID:
sf0910357589(Gbrowse)
Chromosome: chr09 Position: 10357589 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 96.35% | 3.65% |
| All Indica | 780 | 94.49% | 5.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 365 | 92.33% | 7.67% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 207 | 98.07% | 1.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910357589 | G->A | LOC_Os09g16940(LOC_Os09g16940.1) | Non-Synonymous SNP |