Detailed information of SNP:
|
SNP ID:
sf0910383463(Gbrowse)
Chromosome: chr09 Position: 10383463 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 75.78% | 24.22% |
| All Indica | 789 | 97.34% | 2.66% |
| All Japonica | 496 | 40.52% | 59.48% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 367 | 96.19% | 3.81% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 51.04% | 48.96% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910383463 | G->C | INTERGENIC | None |