Detailed information of SNP:
|
SNP ID:
sf0910412876(Gbrowse)
Chromosome: chr09 Position: 10412876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.50% | 21.50% |
| All Indica | 797 | 63.24% | 36.76% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 55.23% | 44.77% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910412876 | G->A | LOC_Os09g17020(LOC_Os09g17020.1) | INTRON |