Detailed information of SNP:
|
SNP ID:
sf0910412880(Gbrowse)
Chromosome: chr09 Position: 10412880 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 78.26% | 21.74% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 43.64% | 56.36% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910412880 | T->C | LOC_Os09g17020(LOC_Os09g17020.1) | INTRON |