Detailed information of SNP:
|
SNP ID:
sf0910413093(Gbrowse)
Chromosome: chr09 Position: 10413093 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 81.02% | 18.98% |
| All Indica | 794 | 67.38% | 32.62% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 56.33% | 43.67% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910413093 | G->A | LOC_Os09g17020(LOC_Os09g17020.1) | INTRON |