Detailed information of SNP:
|
SNP ID:
sf0910413380(Gbrowse)
Chromosome: chr09 Position: 10413380 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 56.99% | 43.01% |
| All Indica | 791 | 90.64% | 9.36% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910413380 | T->A | LOC_Os09g17020(LOC_Os09g17020.1) | INTRON |