Detailed information of SNP:
|
SNP ID:
sf0910446507(Gbrowse)
Chromosome: chr09 Position: 10446507 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.50% | 5.50% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 86.67% | 13.33% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 85.93% | 14.07% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910446507 | C->T | LOC_Os09g17040(LOC_Os09g17040.1) | INTRON |