Detailed information of SNP:
|
SNP ID:
sf0910452385(Gbrowse)
Chromosome: chr09 Position: 10452385 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 76.80% | 23.20% |
| All Indica | 795 | 96.48% | 3.52% |
| All Japonica | 497 | 44.87% | 55.13% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910452385 | C->T | INTERGENIC | None |