Detailed information of SNP:
|
SNP ID:
sf0910453035(Gbrowse)
Chromosome: chr09 Position: 10453035 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 74.47% | 25.53% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 495 | 40.61% | 59.39% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910453035 | C->T | INTERGENIC | None |