Detailed information of SNP:
|
SNP ID:
sf0910453612(Gbrowse)
Chromosome: chr09 Position: 10453612 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.94% | 24.06% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 44.67% | 55.33% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910453612 | C->T | LOC_Os09g17060(LOC_Os09g17060.1) | Non-Synonymous SNP |