Detailed information of SNP:
|
SNP ID:
sf0910485270(Gbrowse)
Chromosome: chr09 Position: 10485270 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.38% | 17.62% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910485270 | C->T | INTERGENIC | None |