Detailed information of SNP:
|
SNP ID:
sf0910499002(Gbrowse)
Chromosome: chr09 Position: 10499002 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.81% | 27.19% |
| All Indica | 797 | 67.13% | 32.87% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 50.67% | 49.33% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910499002 | C->T | INTERGENIC | None |