Detailed information of SNP:



SNP ID: sf0910499549(Gbrowse)

Chromosome: chr09

Position: 10499549
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 63.84% 36.16%
All Indica796 39.70% 60.30%
All Japonica497 97.18% 2.82%
Aus67 92.54% 7.46%
Indica I373 59.79% 40.21%
Indica II212 20.28% 79.72%
Indica Intermediate211 23.70% 76.30%
Temperate Japonica335 97.01% 2.99%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0910499549 C->T INTERGENIC None