Detailed information of SNP:
|
SNP ID:
sf0910499549(Gbrowse)
Chromosome: chr09 Position: 10499549 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 63.84% | 36.16% |
| All Indica | 796 | 39.70% | 60.30% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 59.79% | 40.21% |
| Indica II | 212 | 20.28% | 79.72% |
| Indica Intermediate | 211 | 23.70% | 76.30% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910499549 | C->T | INTERGENIC | None |