Detailed information of SNP:
|
SNP ID:
sf0910544580(Gbrowse)
Chromosome: chr09 Position: 10544580 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 90.71% | 9.29% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 485 | 94.64% | 5.36% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 328 | 93.60% | 6.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910544580 | C->G | INTERGENIC | None |