Detailed information of SNP:
|
SNP ID:
sf0910545559(Gbrowse)
Chromosome: chr09 Position: 10545559 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 78.15% | 21.85% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910545559 | C->A | LOC_Os09g17190(LOC_Os09g17190.1) | Synonymous |