Detailed information of SNP:
|
SNP ID:
sf0910579421(Gbrowse)
Chromosome: chr09 Position: 10579421 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1300 | 88.31% | 11.69% |
| All Indica | 734 | 90.87% | 9.13% |
| All Japonica | 468 | 85.47% | 14.53% |
| Aus | 48 | 77.08% | 22.92% |
| Indica I | 340 | 89.12% | 10.88% |
| Indica II | 198 | 94.44% | 5.56% |
| Indica Intermediate | 196 | 90.31% | 9.69% |
| Temperate Japonica | 312 | 82.69% | 17.31% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910579421 | A->G | LOC_Os09g17250(LOC_Os09g17250.1) | INTRON |