Detailed information of SNP:
|
SNP ID:
sf0910605254(Gbrowse)
Chromosome: chr09 Position: 10605254 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 88.48% | 11.52% |
| All Indica | 789 | 98.35% | 1.65% |
| All Japonica | 495 | 70.51% | 29.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 60.96% | 39.04% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910605254 | C->T | LOC_Os09g17329(LOC_Os09g17329.2) | INTRON |
| sf0910605254 | C->T | LOC_Os09g17329(LOC_Os09g17329.1) | INTRON |