Detailed information of SNP:
|
SNP ID:
sf0910615658(Gbrowse)
Chromosome: chr09 Position: 10615658 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 62.59% | 37.41% |
| All Indica | 717 | 40.45% | 59.55% |
| All Japonica | 476 | 96.01% | 3.99% |
| Aus | 61 | 65.57% | 34.43% |
| Indica I | 334 | 40.12% | 59.88% |
| Indica II | 198 | 39.39% | 60.61% |
| Indica Intermediate | 185 | 42.16% | 57.84% |
| Temperate Japonica | 325 | 98.15% | 1.85% |
| Tropical Japonica | 87 | 88.51% | 11.49% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910615658 | A->G | LOC_Os09g17329(LOC_Os09g17329.2) | INTRON |
| sf0910615658 | A->G | LOC_Os09g17329(LOC_Os09g17329.1) | INTRON |