Detailed information of SNP:
|
SNP ID:
sf0910718136(Gbrowse)
Chromosome: chr09 Position: 10718136 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 91.22% | 8.78% |
| All Indica | 793 | 93.32% | 6.68% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910718136 | C->T | LOC_Os09g17520(LOC_Os09g17520.1) | INTRON |