Detailed information of SNP:
|
SNP ID:
sf0910733140(Gbrowse)
Chromosome: chr09 Position: 10733140 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 81.54% | 18.46% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910733140 | G->C | LOC_Os09g17540(LOC_Os09g17540.1) | Non-Synonymous SNP |