Detailed information of SNP:
|
SNP ID:
sf0910733255(Gbrowse)
Chromosome: chr09 Position: 10733255 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 69.24% | 30.76% |
| All Indica | 793 | 53.59% | 46.41% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 59.09% | 40.91% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 207 | 32.85% | 67.15% |
| Temperate Japonica | 333 | 91.89% | 8.11% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910733255 | G->T | LOC_Os09g17540(LOC_Os09g17540.1) | Non-Synonymous SNP |