Detailed information of SNP:
|
SNP ID:
sf0910733910(Gbrowse)
Chromosome: chr09 Position: 10733910 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.26% | 24.74% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 63.28% | 36.72% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910733910 | C->T | LOC_Os09g17540(LOC_Os09g17540.1) | Synonymous |