Detailed information of SNP:
|
SNP ID:
sf0910734817(Gbrowse)
Chromosome: chr09 Position: 10734817 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.61% | 30.39% |
| All Indica | 798 | 48.25% | 51.75% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 52.14% | 47.86% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910734817 | C->T | INTERGENIC | None |