Detailed information of SNP:
|
SNP ID:
sf0910742891(Gbrowse)
Chromosome: chr09 Position: 10742891 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.76% | 31.24% |
| All Indica | 799 | 54.19% | 45.81% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910742891 | T->C | INTERGENIC | None |