Detailed information of SNP:
|
SNP ID:
sf0910743581(Gbrowse)
Chromosome: chr09 Position: 10743581 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 799 | 84.36% | 15.64% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910743581 | G->A | INTERGENIC | None |