Detailed information of SNP:
|
SNP ID:
sf0910744950(Gbrowse)
Chromosome: chr09 Position: 10744950 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.30% | 28.70% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910744950 | C->A | INTERGENIC | None |