Detailed information of SNP:
|
SNP ID:
sf0910746643(Gbrowse)
Chromosome: chr09 Position: 10746643 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.05% | 29.95% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 37.01% | 62.99% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910746643 | G->A | INTERGENIC | None |