Detailed information of SNP:
|
SNP ID:
sf0910747563(Gbrowse)
Chromosome: chr09 Position: 10747563 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.45% | 29.55% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 26.96% | 73.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910747563 | C->T | INTERGENIC | None |