Detailed information of SNP:
|
SNP ID:
sf0910779391(Gbrowse)
Chromosome: chr09 Position: 10779391 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 67.26% | 32.74% |
| All Indica | 795 | 92.45% | 7.55% |
| All Japonica | 496 | 25.81% | 74.19% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 18.86% | 81.14% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910779391 | C->T | INTERGENIC | None |