Detailed information of SNP:
|
SNP ID:
sf0910780139(Gbrowse)
Chromosome: chr09 Position: 10780139 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 50.41% | 49.59% |
| All Indica | 739 | 65.09% | 34.91% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 339 | 74.63% | 25.37% |
| Indica II | 207 | 42.51% | 57.49% |
| Indica Intermediate | 193 | 72.54% | 27.46% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910780139 | A->G | INTERGENIC | None |