Detailed information of SNP:
|
SNP ID:
sf0910795348(Gbrowse)
Chromosome: chr09 Position: 10795348 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.02% | 7.98% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 495 | 78.18% | 21.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910795348 | G->A | LOC_Os09g17640(LOC_Os09g17640.1) | INTRON |