Detailed information of SNP:
|
SNP ID:
sf0910801970(Gbrowse)
Chromosome: chr09 Position: 10801970 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 77.40% | 22.60% |
| All Indica | 797 | 70.26% | 29.74% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910801970 | G->A | INTERGENIC | None |