Detailed information of SNP:
|
SNP ID:
sf0910804762(Gbrowse)
Chromosome: chr09 Position: 10804762 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.84% | 14.16% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 66.60% | 33.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910804762 | G->A | INTERGENIC | None |