Detailed information of SNP:
|
SNP ID:
sf0910821832(Gbrowse)
Chromosome: chr09 Position: 10821832 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.22% | 40.78% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910821832 | A->C | INTERGENIC | None |