Detailed information of SNP:
|
SNP ID:
sf0910827659(Gbrowse)
Chromosome: chr09 Position: 10827659 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.00% | 46.00% |
| All Indica | 795 | 91.19% | 8.81% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 87.90% | 12.10% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910827659 | T->C | INTERGENIC | None |