Detailed information of SNP:
|
SNP ID:
sf0910835348(Gbrowse)
Chromosome: chr09 Position: 10835348 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.55% | 24.45% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 28.96% | 71.04% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910835348 | T->A | LOC_Os09g17730(LOC_Os09g17730.2) | INTRON |
| sf0910835348 | T->A | LOC_Os09g17730(LOC_Os09g17730.1) | INTRON |