Detailed information of SNP:
|
SNP ID:
sf0910843272(Gbrowse)
Chromosome: chr09 Position: 10843272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 86.69% | 13.31% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 494 | 67.81% | 32.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 74.25% | 25.75% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910843272 | C->T | INTERGENIC | None |