Detailed information of SNP:
|
SNP ID:
sf0910845992(Gbrowse)
Chromosome: chr09 Position: 10845992 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 76.02% | 23.98% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 66.87% | 33.13% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910845992 | G->A | LOC_Os09g17740(LOC_Os09g17740.1) | UTR_3_PRIME |