Detailed information of SNP:
|
SNP ID:
sf0910846098(Gbrowse)
Chromosome: chr09 Position: 10846098 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.40% | 28.60% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 36.83% | 63.17% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910846098 | G->A | LOC_Os09g17740(LOC_Os09g17740.1) | UTR_3_PRIME |