Detailed information of SNP:
|
SNP ID:
sf0910848081(Gbrowse)
Chromosome: chr09 Position: 10848081 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.11% | 9.89% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910848081 | C->T | INTERGENIC | None |