Detailed information of SNP:
|
SNP ID:
sf0910938325(Gbrowse)
Chromosome: chr09 Position: 10938325 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 60.79% | 39.21% |
| All Indica | 782 | 90.92% | 9.08% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 89.46% | 10.54% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 334 | 11.38% | 88.62% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910938325 | A->G | LOC_Os09g17880(LOC_Os09g17880.1) | Non-Synonymous SNP |