Detailed information of SNP:
|
SNP ID:
sf0910944154(Gbrowse)
Chromosome: chr09 Position: 10944154 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 61.40% | 38.60% |
| All Indica | 795 | 89.69% | 10.31% |
| All Japonica | 494 | 11.13% | 88.87% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 333 | 11.41% | 88.59% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910944154 | G->C | LOC_Os09g17890(LOC_Os09g17890.1) | INTRON |