Detailed information of SNP:
|
SNP ID:
sf0910967946(Gbrowse)
Chromosome: chr09 Position: 10967946 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 83.12% | 16.88% |
| All Indica | 718 | 73.96% | 26.04% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 57 | 54.39% | 45.61% |
| Indica I | 342 | 81.29% | 18.71% |
| Indica II | 198 | 64.14% | 35.86% |
| Indica Intermediate | 178 | 70.79% | 29.21% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910967946 | T->C | INTERGENIC | None |