Detailed information of SNP:
|
SNP ID:
sf0910968165(Gbrowse)
Chromosome: chr09 Position: 10968165 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 60.12% | 39.88% |
| All Indica | 789 | 88.34% | 11.66% |
| All Japonica | 475 | 10.74% | 89.26% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 373 | 82.04% | 17.96% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 322 | 10.25% | 89.75% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 60 | 23.33% | 76.67% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910968165 | T->C | INTERGENIC | None |