Detailed information of SNP:
|
SNP ID:
sf0911020961(Gbrowse)
Chromosome: chr09 Position: 11020961 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.34% | 48.66% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 71.93% | 28.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911020961 | G->A | INTERGENIC | None |