Detailed information of SNP:
|
SNP ID:
sf0911038398(Gbrowse)
Chromosome: chr09 Position: 11038398 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 89.55% | 10.45% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0911038398 | A->C | LOC_Os09g18020(LOC_Os09g18020.1) | INTRON |